Response to drought and salt stress in leaves of poplar (Populus alba × Populus glandulosa): expression profiling by oligonucleotide microarray analysis.
Identifieur interne : 002071 ( Main/Exploration ); précédent : 002070; suivant : 002072Response to drought and salt stress in leaves of poplar (Populus alba × Populus glandulosa): expression profiling by oligonucleotide microarray analysis.
Auteurs : Seo-Kyung Yoon [Corée du Sud] ; Eung-Jun Park [Corée du Sud] ; Young-Im Choi [Corée du Sud] ; Eun-Kyung Bae [Corée du Sud] ; Joon-Hyeok Kim [Corée du Sud] ; So-Young Park [Corée du Sud] ; Kyu-Suk Kang [Corée du Sud] ; Hyoshin Lee [Corée du Sud]Source :
- Plant physiology and biochemistry : PPB [ 1873-2690 ] ; 2014.
Descripteurs français
- KwdFr :
- Chlorure de sodium (pharmacologie), Feuilles de plante (effets des médicaments et des substances chimiques), Feuilles de plante (génétique), Populus (effets des médicaments et des substances chimiques), Populus (génétique), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Régulation de l'expression des gènes végétaux (génétique), Sécheresses (MeSH), Séquençage par oligonucléotides en batterie (MeSH).
- MESH :
- effets des médicaments et des substances chimiques : Feuilles de plante, Populus, Régulation de l'expression des gènes végétaux.
- génétique : Feuilles de plante, Populus, Régulation de l'expression des gènes végétaux.
- pharmacologie : Chlorure de sodium.
- Sécheresses, Séquençage par oligonucléotides en batterie.
English descriptors
- KwdEn :
- MESH :
- chemical , pharmacology : Sodium Chloride.
- drug effects : Gene Expression Regulation, Plant, Plant Leaves, Populus.
- genetics : Gene Expression Regulation, Plant, Plant Leaves, Populus.
- Droughts, Oligonucleotide Array Sequence Analysis.
Abstract
Drought and salt stresses are major environmental constraints on forest productivity. To identify genes responsible for stress tolerance, we conducted a genome-wide analysis in poplar (Populus alba × Populus glandulosa) leaves exposed to drought and salt (NaCl) stresses. We investigated gene expression at the mRNA level using oligonucleotide microarrays containing 44,718 genes from Populus trichocarpa. A total of 1604 and 1042 genes were up-regulated (≥2-fold; P value < 0.05) by drought and salt stresses, respectively, and 765 genes were up-regulated by both stresses. In addition, 2742 and 1685 genes were down-regulated by drought and salt stresses, respectively, and 1564 genes were down-regulated by both stresses. The large number of genes regulated by both stresses suggests that crosstalk occurs between the drought and salt stress responses. Most up-regulated genes were involved in functions such as subcellular localization, signal transduction, metabolism, and transcription. Among the up-regulated genes, we identified 47 signaling proteins, 65 transcription factors, and 43 abiotic stress-related genes. Several genes were modulated by only one of the two stresses. About 25% of the genes significantly regulated by these stresses are of unknown function, suggesting that poplar may provide an opportunity to discover novel stress-related genes.
DOI: 10.1016/j.plaphy.2014.09.008
PubMed: 25285889
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea; Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Park, Eung Jun" sort="Park, Eung Jun" uniqKey="Park E" first="Eung-Jun" last="Park">Eung-Jun Park</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847</wicri:regionArea><wicri:noRegion>Suwon 441-847</wicri:noRegion></affiliation></author><author><name sortKey="Choi, Young Im" sort="Choi, Young Im" uniqKey="Choi Y" first="Young-Im" last="Choi">Young-Im Choi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847</wicri:regionArea><wicri:noRegion>Suwon 441-847</wicri:noRegion></affiliation></author><author><name sortKey="Bae, Eun Kyung" sort="Bae, Eun Kyung" uniqKey="Bae E" first="Eun-Kyung" last="Bae">Eun-Kyung Bae</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847</wicri:regionArea><wicri:noRegion>Suwon 441-847</wicri:noRegion></affiliation></author><author><name sortKey="Kim, Joon Hyeok" sort="Kim, Joon Hyeok" uniqKey="Kim J" first="Joon-Hyeok" last="Kim">Joon-Hyeok Kim</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847</wicri:regionArea><wicri:noRegion>Suwon 441-847</wicri:noRegion></affiliation></author><author><name sortKey="Park, So Young" sort="Park, So Young" uniqKey="Park S" first="So-Young" last="Park">So-Young Park</name><affiliation wicri:level="1"><nlm:affiliation>Department of Horticultural Science, Chungbuk National University, 52 Naesudong-ro, Cheongju 361-763, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Horticultural Science, Chungbuk National University, 52 Naesudong-ro, Cheongju 361-763</wicri:regionArea><wicri:noRegion>Cheongju 361-763</wicri:noRegion></affiliation></author><author><name sortKey="Kang, Kyu Suk" sort="Kang, Kyu Suk" uniqKey="Kang K" first="Kyu-Suk" last="Kang">Kyu-Suk Kang</name><affiliation wicri:level="4"><nlm:affiliation>Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName><orgName type="university">Université nationale de Séoul</orgName><placeName><settlement type="city">Séoul</settlement></placeName></affiliation></author><author><name sortKey="Lee, Hyoshin" sort="Lee, Hyoshin" uniqKey="Lee H" first="Hyoshin" last="Lee">Hyoshin Lee</name><affiliation wicri:level="1"><nlm:affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea. Electronic address: hslee@forest.go.kr.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847</wicri:regionArea><wicri:noRegion>Suwon 441-847</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant physiology and biochemistry : PPB</title><idno type="eISSN">1873-2690</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Droughts (MeSH)</term><term>Gene Expression Regulation, Plant (drug effects)</term><term>Gene Expression Regulation, Plant (genetics)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Plant Leaves (drug effects)</term><term>Plant Leaves (genetics)</term><term>Populus (drug effects)</term><term>Populus (genetics)</term><term>Sodium Chloride (pharmacology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Chlorure de sodium (pharmacologie)</term><term>Feuilles de plante (effets des médicaments et des substances chimiques)</term><term>Feuilles de plante (génétique)</term><term>Populus (effets des médicaments et des substances chimiques)</term><term>Populus (génétique)</term><term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Sécheresses (MeSH)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Sodium Chloride</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Feuilles de plante</term><term>Populus</term><term>Régulation de l'expression des gènes végétaux</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Feuilles de plante</term><term>Populus</term><term>Régulation de l'expression des gènes végétaux</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Chlorure de sodium</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Droughts</term><term>Oligonucleotide Array Sequence Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Sécheresses</term><term>Séquençage par oligonucléotides en batterie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Drought and salt stresses are major environmental constraints on forest productivity. To identify genes responsible for stress tolerance, we conducted a genome-wide analysis in poplar (Populus alba × Populus glandulosa) leaves exposed to drought and salt (NaCl) stresses. We investigated gene expression at the mRNA level using oligonucleotide microarrays containing 44,718 genes from Populus trichocarpa. A total of 1604 and 1042 genes were up-regulated (≥2-fold; P value < 0.05) by drought and salt stresses, respectively, and 765 genes were up-regulated by both stresses. In addition, 2742 and 1685 genes were down-regulated by drought and salt stresses, respectively, and 1564 genes were down-regulated by both stresses. The large number of genes regulated by both stresses suggests that crosstalk occurs between the drought and salt stress responses. Most up-regulated genes were involved in functions such as subcellular localization, signal transduction, metabolism, and transcription. Among the up-regulated genes, we identified 47 signaling proteins, 65 transcription factors, and 43 abiotic stress-related genes. Several genes were modulated by only one of the two stresses. About 25% of the genes significantly regulated by these stresses are of unknown function, suggesting that poplar may provide an opportunity to discover novel stress-related genes. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25285889</PMID><DateCompleted><Year>2015</Year><Month>08</Month><Day>20</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2690</ISSN><JournalIssue CitedMedium="Internet"><Volume>84</Volume><PubDate><Year>2014</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Plant physiology and biochemistry : PPB</Title><ISOAbbreviation>Plant Physiol Biochem</ISOAbbreviation></Journal><ArticleTitle>Response to drought and salt stress in leaves of poplar (Populus alba × Populus glandulosa): expression profiling by oligonucleotide microarray analysis.</ArticleTitle><Pagination><MedlinePgn>158-168</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0981-9428(14)00293-9</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.plaphy.2014.09.008</ELocationID><Abstract><AbstractText>Drought and salt stresses are major environmental constraints on forest productivity. To identify genes responsible for stress tolerance, we conducted a genome-wide analysis in poplar (Populus alba × Populus glandulosa) leaves exposed to drought and salt (NaCl) stresses. We investigated gene expression at the mRNA level using oligonucleotide microarrays containing 44,718 genes from Populus trichocarpa. A total of 1604 and 1042 genes were up-regulated (≥2-fold; P value < 0.05) by drought and salt stresses, respectively, and 765 genes were up-regulated by both stresses. In addition, 2742 and 1685 genes were down-regulated by drought and salt stresses, respectively, and 1564 genes were down-regulated by both stresses. The large number of genes regulated by both stresses suggests that crosstalk occurs between the drought and salt stress responses. Most up-regulated genes were involved in functions such as subcellular localization, signal transduction, metabolism, and transcription. Among the up-regulated genes, we identified 47 signaling proteins, 65 transcription factors, and 43 abiotic stress-related genes. Several genes were modulated by only one of the two stresses. About 25% of the genes significantly regulated by these stresses are of unknown function, suggesting that poplar may provide an opportunity to discover novel stress-related genes. </AbstractText><CopyrightInformation>Copyright © 2014 Elsevier Masson SAS. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Yoon</LastName><ForeName>Seo-Kyung</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea; Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Eung-Jun</ForeName><Initials>EJ</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Young-Im</ForeName><Initials>YI</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bae</LastName><ForeName>Eun-Kyung</ForeName><Initials>EK</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Joon-Hyeok</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>So-Young</ForeName><Initials>SY</Initials><AffiliationInfo><Affiliation>Department of Horticultural Science, Chungbuk National University, 52 Naesudong-ro, Cheongju 361-763, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Kyu-Suk</ForeName><Initials>KS</Initials><AffiliationInfo><Affiliation>Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Seoul 151-742, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Hyoshin</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Forest Genetic Resources, Korea Forest Research Institute, 39 Onjeong-ro, Suwon 441-847, Republic of Korea. Electronic address: hslee@forest.go.kr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>09</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>France</Country><MedlineTA>Plant Physiol Biochem</MedlineTA><NlmUniqueID>9882449</NlmUniqueID><ISSNLinking>0981-9428</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>451W47IQ8X</RegistryNumber><NameOfSubstance UI="D012965">Sodium Chloride</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="Y">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012965" MajorTopicYN="N">Sodium Chloride</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Drought stress</Keyword><Keyword MajorTopicYN="N">Gene expression</Keyword><Keyword MajorTopicYN="N">Oligonucleotide microarray</Keyword><Keyword MajorTopicYN="N">Populus</Keyword><Keyword MajorTopicYN="N">Salt stress</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>05</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>09</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>8</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25285889</ArticleId><ArticleId IdType="pii">S0981-9428(14)00293-9</ArticleId><ArticleId IdType="doi">10.1016/j.plaphy.2014.09.008</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li></country><region><li>Région capitale de Séoul</li></region><settlement><li>Séoul</li></settlement><orgName><li>Université nationale de Séoul</li></orgName></list><tree><country name="Corée du Sud"><region name="Région capitale de Séoul"><name sortKey="Yoon, Seo Kyung" sort="Yoon, Seo Kyung" uniqKey="Yoon S" first="Seo-Kyung" last="Yoon">Seo-Kyung Yoon</name></region><name sortKey="Bae, Eun Kyung" sort="Bae, Eun Kyung" uniqKey="Bae E" first="Eun-Kyung" last="Bae">Eun-Kyung Bae</name><name sortKey="Choi, Young Im" sort="Choi, Young Im" uniqKey="Choi Y" first="Young-Im" last="Choi">Young-Im Choi</name><name sortKey="Kang, Kyu Suk" sort="Kang, Kyu Suk" uniqKey="Kang K" first="Kyu-Suk" last="Kang">Kyu-Suk Kang</name><name sortKey="Kim, Joon Hyeok" sort="Kim, Joon Hyeok" uniqKey="Kim J" first="Joon-Hyeok" last="Kim">Joon-Hyeok Kim</name><name sortKey="Lee, Hyoshin" sort="Lee, Hyoshin" uniqKey="Lee H" first="Hyoshin" last="Lee">Hyoshin Lee</name><name sortKey="Park, Eung Jun" sort="Park, Eung Jun" uniqKey="Park E" first="Eung-Jun" last="Park">Eung-Jun Park</name><name sortKey="Park, So Young" sort="Park, So Young" uniqKey="Park S" first="So-Young" last="Park">So-Young Park</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
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|texte= Response to drought and salt stress in leaves of poplar (Populus alba × Populus glandulosa): expression profiling by oligonucleotide microarray analysis.
}}
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